Basic Information
Locus ID:
BniB02g030850.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ATP binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 39845375 | 39850060 | - | BniB02g030850.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 91,614.35 Da | 53.86 | 87.09 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 539 | 672 | 6.31743E-24 | - |
| Pfam | PF17862 | AAA+ lid domain | 693 | 734 | 9.2E-11 | IPR041569 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 541 | 671 | 3.5E-38 | IPR003959 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 501 | 783 | 2.58E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 500 | 783 | 4.1E-94 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 673 | 777 | 4.1E-94 | - |
| SMART | SM00382 | AAA_5 | 537 | 674 | 1.3E-20 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 644 | 663 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 180 | 219 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 219 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 733 | 769 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 427 | 474 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 182 | 197 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 428 | 463 | - | - |
| Coils | Coil | Coil | 733 | 760 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52882.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_009119821.1 | calmodulin-interacting protein 111 isoform X1 [Brassica rapa] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7V0S8 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_035647 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology