Basic Information
Locus ID:
BniB02g030340.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
heat shock protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 39368822 | 39371334 | + | BniB02g030340.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.96 | 81,061.11 Da | 39.66 | 82.82 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16927 | HATPase_Hsp90-like | 19 | 207 | 8.29051E-110 | - |
| Pfam | PF02518 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 32 | 186 | 1.7E-14 | IPR003594 |
| Pfam | PF00183 | Hsp90 protein | 189 | 700 | 2.3E-236 | IPR001404 |
| SUPERFAMILY | SSF55874 | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 10 | 218 | 2.51E-75 | IPR036890 |
| SUPERFAMILY | SSF54211 | Ribosomal protein S5 domain 2-like | 269 | 524 | 5.84E-109 | IPR020568 |
| SUPERFAMILY | SSF110942 | HSP90 C-terminal domain | 548 | 670 | 3.53E-38 | IPR037196 |
| Gene3D | G3DSA:3.30.230.80 | - | 268 | 436 | 8.5E-86 | - |
| Gene3D | G3DSA:3.30.565.10 | - | 7 | 233 | 2.4E-97 | IPR036890 |
| Gene3D | G3DSA:1.20.120.790 | - | 524 | 675 | 5.3E-66 | IPR037196 |
| Gene3D | G3DSA:3.40.50.11260 | - | 437 | 523 | 8.0E-42 | - |
| SMART | SM00387 | HKATPase_4 | 32 | 187 | 1.2E-9 | IPR003594 |
| PIRSF | PIRSF002583 | HSP90_HTPG | 1 | 705 | 6.4E-260 | IPR001404 |
| ProSitePatterns | PS00298 | Heat shock hsp90 proteins family signature. | 30 | 39 | - | IPR019805 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 80 | 97 | 5.7E-84 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 123 | 145 | 5.7E-84 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 175 | 192 | 5.7E-84 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 98 | 115 | 5.7E-84 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 193 | 211 | 5.7E-84 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 31 | 53 | 5.7E-84 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 10 | 30 | 5.7E-84 | IPR020575 |
| Hamap | MF_00505 | Chaperone protein HtpG [htpG]. | 7 | 671 | 27.257591 | IPR001404 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 679 | 705 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 244 | - | - |
| Coils | Coil | Coil | 523 | 549 | - | - |
| Coils | Coil | Coil | 229 | 249 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
map04217 (Necroptosis)
ko04612 (Antigen processing and presentation)
map04612 (Antigen processing and presentation)
map04621 (NOD-like receptor signaling pathway)
ko04626 (Plant-pathogen interaction)
map04626 (Plant-pathogen interaction)
map04657 (IL-17 signaling pathway)
map04659 (Th17 cell differentiation)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52640.1 | heat shock protein 90.1. Encodes a cytosolic heat shock protein AtHSP90.1. AtHSP90.1 interacts with disease resistance signaling components SGT1b and RAR1 and is required for RPS2-mediated resistance. | 0 |
| RefSeq | XP_013611457.1 | PREDICTED: heat shock protein 90-1 [Brassica oleracea var. oleracea] | 0 |
| P27323 | Heat shock protein 90-1 OS=Arabidopsis thaliana OX=3702 GN=HSP90-1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A078GRJ1 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=BnaC09g28660D PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology