Basic Information
Locus ID:
BniB02g029520.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 38181238 | 38183694 | - | BniB02g029520.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.24 | 46,849.41 Da | 30.02 | 76.48 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18345 | Zinc finger domain | 110 | 128 | 6.0E-7 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 138 | 174 | 1.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 300 | 334 | 0.0052 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 260 | 295 | 0.037 | IPR001680 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 104 | 128 | 1.05E-6 | IPR036855 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 136 | 425 | 1.01E-46 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 119 | 279 | 2.1E-19 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 280 | 431 | 1.2E-26 | IPR015943 |
| SMART | SM00320 | WD40_4 | 298 | 335 | 1.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 385 | 422 | 0.74 | IPR001680 |
| SMART | SM00320 | WD40_4 | 135 | 174 | 7.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 258 | 295 | 0.0068 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 28 | 53 | 1.1 | IPR000571 |
| SMART | SM00320 | WD40_4 | 214 | 251 | 5.9 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 106 | 130 | 1.2E-4 | IPR000571 |
| SMART | SM00320 | WD40_4 | 339 | 382 | 6.2 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 104 | 131 | 14.49264 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 265 | 304 | 11.510997 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 142 | 183 | 14.41838 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 265 | 298 | 8.781968 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 142 | 174 | 11.391954 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 161 | 175 | 6.8E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 282 | 296 | 6.8E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 322 | 336 | 6.8E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 70 | 91 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51980.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_018456761.1 | PREDICTED: zinc finger CCCH domain-containing protein 63 [Raphanus sativus] | 0 |
| Q9FNZ1 | Zinc finger CCCH domain-containing protein 63 OS=Arabidopsis thaliana OX=3702 GN=ZFWD2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7S5K8 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_035552 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology