Basic Information
Locus ID:
BniB02g029370.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
MADS-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 38005398 | 38015551 | - | BniB02g029370.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.62 | 39,508.22 Da | 52.43 | 85.96 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 74 | 2.6567E-41 | IPR033896 |
| CDD | cd00265 | MADS_MEF2_like | 195 | 264 | 1.34445E-33 | IPR033896 |
| Pfam | PF01486 | K-box region | 89 | 171 | 7.4E-19 | IPR002487 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 6.9E-26 | IPR002100 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 202 | 248 | 8.4E-24 | IPR002100 |
| SUPERFAMILY | SSF55455 | SRF-like | 195 | 276 | 2.35E-27 | IPR036879 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 76 | 1.44E-31 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 13 | 76 | 2.0E-27 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 204 | 273 | 2.2E-26 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 4.1E-40 | IPR002100 |
| SMART | SM00432 | madsneu2 | 192 | 251 | 4.6E-33 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 31.398539 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 88 | 179 | 12.941387 | IPR002487 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 192 | 252 | 27.333376 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 1.3E-28 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 1.3E-28 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 1.3E-28 | IPR002100 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 309 | 339 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 317 | 331 | - | - |
| Coils | Coil | Coil | 144 | 174 | - | - |
| Coils | Coil | Coil | 281 | 301 | - | - |
| Coils | Coil | Coil | 88 | 108 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51870.4 | - | 0 |
| RefSeq | XP_018454345.1 | PREDICTED: MADS-box protein AGL71 [Raphanus sativus] | 0 |
| Q9LT93 | MADS-box protein AGL71 OS=Arabidopsis thaliana OX=3702 GN=AGL71 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7S3L9 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_035539 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology