Basic Information
Locus ID:
BniB02g028950.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 37387898 | 37390689 | + | BniB02g028950.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.59 | 74,551.18 Da | 41.51 | 95.65 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 141 | 200 | 2.8E-10 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 413 | 674 | 6.2E-36 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 26 | 65 | 5.8E-5 | IPR013210 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 384 | 674 | 5.41E-54 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 25 | 234 | 3.06E-42 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 488 | 680 | 2.4E-37 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 377 | 487 | 1.1E-25 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 138 | 258 | 1.1E-31 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 27 | 137 | 8.8E-26 | IPR032675 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 409 | 675 | 27.905476 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51560.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_013611554.1 | PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 [Brassica oleracea var. oleracea] | 0 |
| Q7XV05 | LRR receptor kinase SERK2 OS=Oryza sativa subsp. japonica OX=39947 GN=SERK2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7S3K1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_035509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology