Basic Information
Locus ID:
BniB02g028570.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 36869882 | 36871465 | - | BniB02g028570.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.49 | 36,389.99 Da | 39.00 | 83.36 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 34 | 186 | 4.59238E-44 | - |
| Pfam | PF00582 | Universal stress protein family | 35 | 162 | 2.8E-7 | IPR006016 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 35 | 183 | 2.43E-8 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 34 | 184 | 1.6E-11 | IPR014729 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 290 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51270.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_018453660.1 | PREDICTED: putative U-box domain-containing protein 53 [Raphanus sativus] | 0 |
| Q9LU47 | Putative U-box domain-containing protein 53 OS=Arabidopsis thaliana OX=3702 GN=PUB53 PE=3 SV=1 | 0 | |
| TrEMBL | A0A6J0L0H0 | putative U-box domain-containing protein 53 OS=Raphanus sativus OX=3726 GN=LOC108824768 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g053410 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg6552 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000002416 |
| Brassicaceae | Brassica nigra | 1 | BniB02g028570.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1395 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00029733, Pov_00040771 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_036504 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G177700 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-38007 |