Basic Information
Locus ID:
BniB02g026480.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 30535921 | 30540488 | - | BniB02g026480.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 105,070.47 Da | 36.68 | 92.57 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 649 | 904 | 4.18989E-86 | - |
| Pfam | PF00069 | Protein kinase domain | 633 | 899 | 9.6E-45 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 29 | 62 | 5.4E-6 | IPR013210 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 617 | 914 | 4.18E-77 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 40 | 387 | 7.48E-51 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 286 | 408 | 6.9E-14 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 28 | 183 | 5.7E-39 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 603 | 706 | 3.6E-35 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 707 | 921 | 2.9E-55 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 184 | 285 | 1.6E-20 | IPR032675 |
| SMART | SM00220 | serkin_6 | 631 | 905 | 2.3E-32 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 267 | 289 | 8.058487 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 631 | 905 | 38.025421 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 637 | 659 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 751 | 763 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49760.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_013749408.2 | leucine-rich repeat receptor protein kinase HPCA1-like [Brassica napus] | 0 |
| Q8GZ99 | Leucine-rich repeat receptor protein kinase HPCA1 OS=Arabidopsis thaliana OX=3702 GN=HPCA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A816J363 | (rape) hypothetical protein (Fragment) OS=Brassica napus OX=3708 GN=DARMORV10_C09P38700.1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology