Basic Information
Locus ID:
BniB02g026470.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 30519680 | 30523009 | - | BniB02g026470.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.50 | 107,046.91 Da | 35.60 | 102.90 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 662 | 933 | 1.30111E-92 | - |
| Pfam | PF00069 | Protein kinase domain | 658 | 931 | 1.6E-48 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 484 | 543 | 2.0E-6 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 461 | 481 | 1.3 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 28 | 68 | 8.6E-7 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 254 | 570 | 1.77E-51 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 73 | 353 | 8.63E-49 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 645 | 933 | 1.62E-74 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 27 | 183 | 3.9E-27 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 184 | 286 | 5.4E-27 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 363 | 576 | 6.2E-55 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 297 | 362 | 8.2E-15 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 741 | 952 | 2.3E-58 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 639 | 740 | 1.1E-20 | - |
| SMART | SM00369 | LRR_typ_2 | 507 | 531 | 9.2 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 291 | 315 | 15.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 483 | 506 | 68.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 144 | 168 | 140.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 218 | 242 | 94.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 95 | 121 | 25.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 656 | 940 | 1.1E-38 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 509 | 532 | 7.026593 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 656 | 942 | 38.958263 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 662 | 685 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 784 | 796 | - | IPR008271 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 507 | 520 | 9.6E-6 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 462 | 475 | 9.6E-6 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49660.1 | Leucine-rich repeat transmembrane protein kinase family protein. | 0 |
| RefSeq | XP_018456828.1 | PREDICTED: receptor-like protein kinase HSL1 [Raphanus sativus] | 0 |
| Q9FGL5 | Receptor protein-tyrosine kinase CEPR1 OS=Arabidopsis thaliana OX=3702 GN=CEPR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7V0G2 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_035347 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10765, jg22673 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_8826, gene_8827 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah036499, Ah036501 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg39569, Sbi_jg54766, Sbi_jg54767 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14767 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00028524 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl12644, Sgl12660, Sgl17912 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000018338, gene:ENSEOMG00000033609 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0020340, CQ.Regalona.r1.1AG0020350 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30042520, pistato.v30046880 |
| Apiaceae | Apium graveolens | 1 | Ag4G01883 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G019310 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103705713 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.725.V1.1, AsparagusV1_03.726.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G24679 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G49660.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012576m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g10770.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g026470.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2727 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2869 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g14320 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g31550 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-1180, nbisL1-mrna-12398 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.276 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037128 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G23384, Lb7G32875 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0399350, gene-QOZ80_5BG0448040 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0421040.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_000148, gene-QYE76_000409 |
| Poaceae | Oryza coarctata | 2 | Oco23G011130, Oco24G010950 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g43660.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G166200 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr04G019810, Chr06G020740 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G029500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG002150, gene_TRIDC5BG001960 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G013100.1, TraesCS5B02G011300.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb032940_P001, Zm00001eb134240_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-44428, nbis-gene-47427 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g25400, Zma_g26193 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG12.1735, evm.TU.LG12.1736, evm.TU.LG12.1737 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g26970 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.857 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9377 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7524 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20587 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.246 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003363 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-21288 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17079 |
| Salicaceae | Populus euphratica | 1 | populus_peu32123 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132609148, gene-LOC132627688 |
| Solanaceae | Solanum chilense | 1 | SOLCI005026300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017804 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.31167_chr11_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2765 |
| Zosteraceae | Zostera marina | 1 | Zosma06g02810.v3.1 |