Basic Information
Locus ID:
BniB02g022680.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 17011136 | 17014094 | - | BniB02g022680.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.11 | 71,589.19 Da | 54.77 | 67.97 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 169 | 474 | 1.99296E-163 | - |
| Pfam | PF01753 | MYND finger | 64 | 101 | 6.8E-11 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 170 | 473 | 8.0E-39 | IPR001394 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 62 | 105 | 7.67E-13 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 167 | 481 | 6.28E-85 | IPR038765 |
| Gene3D | G3DSA:6.10.140.2220 | - | 55 | 106 | 6.6E-15 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 164 | 490 | 7.6E-88 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 64 | 101 | 12.769351 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 170 | 476 | 48.300262 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 171 | 186 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 64 | 101 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 480 | 645 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 585 | 625 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 499 | 535 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 536 | 551 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 557 | 571 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 626 | 645 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 484 | 498 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24640.1 | ubiquitin-specific protease 19. | 0 |
| RefSeq | XP_018433985.1 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 19-like isoform X1 [Raphanus sativus] | 0 |
| Q9SJA1 | Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana OX=3702 GN=UBP19 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6J0JEE1 | ubiquitin carboxyl-terminal hydrolase 19-like isoform X1 OS=Raphanus sativus OX=3726 GN=LOC108806384 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology