Basic Information
Locus ID:
BniB02g021140.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
GGPS2
Description:
Belongs to the FPP GGPP synthase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 15129081 | 15130196 | - | BniB02g021140.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 40,669.53 Da | 36.52 | 102.05 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00685 | Trans_IPPS_HT | 107 | 369 | 2.58319E-86 | IPR000092 |
| Pfam | PF00348 | Polyprenyl synthetase | 107 | 342 | 3.2E-53 | IPR000092 |
| SUPERFAMILY | SSF48576 | Terpenoid synthases | 83 | 357 | 1.15E-83 | IPR008949 |
| Gene3D | G3DSA:1.10.600.10 | Farnesyl Diphosphate Synthase | 72 | 371 | 1.4E-99 | IPR008949 |
| ProSitePatterns | PS00444 | Polyprenyl synthases signature 2. | 289 | 301 | - | IPR033749 |
| ProSitePatterns | PS00723 | Polyprenyl synthases signature 1. | 156 | 172 | - | IPR033749 |
| SFLD | SFLDG01017 | Polyprenyl Transferase Like | 83 | 369 | 0.0 | - |
| SFLD | SFLDS00005 | Isoprenoid Synthase Type I | 83 | 369 | 0.0 | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Module:
Reaction:
R01658 (Dimethylallyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranyl diphosphate)
R02003 (Geranyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + trans,trans-Farnesyl diphosphate)
R02061 (trans,trans-Farnesyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranylgeranyl diphosphate)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23800.1 | geranylgeranyl pyrophosphate synthase 2. encodes an endoplasmic reticulum-targeted geranylgeranyl pyrophosphate synthase | 0 |
| RefSeq | XP_009117266.1 | heterodimeric geranylgeranyl pyrophosphate synthase large subunit 2 [Brassica rapa] | 0 |
| O04046 | Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 2 OS=Arabidopsis thaliana OX=3702 GN=GGPPS2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3P5YQ25 | (field mustard) hypothetical protein OS=Brassica campestris OX=3711 GN=BRAA09T41064Z PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology