Basic Information
Locus ID:
BniB02g018510.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Ras-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 12029935 | 12031787 | + | BniB02g018510.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.19 | 15,302.25 Da | 44.02 | 72.61 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00071 | Ras family | 16 | 79 | 4.3E-12 | IPR001806 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 16 | 78 | 4.19E-11 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 7 | 81 | 3.4E-8 | IPR027417 |
| Gene3D | G3DSA:2.60.40.640 | - | 82 | 130 | 7.3E-8 | IPR014752 |
| SMART | SM00175 | rab_sub_5 | 2 | 120 | 5.9E-4 | - |
| ProSiteProfiles | PS51419 | small GTPase Rab1 family profile. | 1 | 130 | 11.254579 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46060.1 | RAB GTPase homolog 8A. small GTP-binding protein (ara-3) | 0 |
| RefSeq | XP_013671969.1 | ras-related protein RABE1c isoform X1 [Brassica napus] | 0 |
| Q39433 | Ras-related protein RAB1BV OS=Beta vulgaris OX=161934 GN=RAB1BV PE=2 SV=1 | 0 | |
| TrEMBL | A0A1D6FRR5 | Ras-related protein RABE1c OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d010538 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg13847, jg2153 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17795 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027032 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g132140 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13520, Sbi_jg52365 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9487 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017686 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33514, Sgl38863 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000002950, gene:ENSEOMG00000003711 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0021570, CQ.Regalona.r1.6BG0022740 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30165410 |
| Arecaceae | Cocos nucifera | 2 | COCNU_08G004780, COCNU_11G000940 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103705179, gene-LOC103711668 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.748.V1.1, AsparagusV1_07.1970.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G15353, Ftri18G17470 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G27690.1, AT5G53530.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10014219m.g.v1.0, Thhalv10025828m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g15670.v2.2, Sp7g25670.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g018510.2N, BniB02g031860.2N, BniB05g009680.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1655 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1790 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno09g06310, gene.Cymno10g06300 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0274s00009.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g06400 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1222 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00011004, Pov_00041190 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G13540, Lb2G13541, Lb5G28206 |
| Poaceae | Echinochloa crus-galli | 6 | AH04.2024, AH05.3523, BH04.2057, BH05.3536, CH04.2391 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_5AG0391370, gene-QOZ80_9AG0690040 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0361260.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_002272, gene-QYE76_065916 |
| Poaceae | Oryza coarctata | 3 | Oco21G008710, Oco22G009970, Oco23G006930 |
| Poaceae | Oryza sativa | 2 | LOC_Os11g41130.2, LOC_Os12g31640.2 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_05G218900, gene-BS78_08G077300 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0103315, Pt_Chr0703536, Pt_Chr0703622 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr04G015550, Chr06G016160, Chr07G014780, Chr19G010330 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G280900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG025970, gene_TRIDC4BG025000 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G164600.2, TraesCS4D02G148600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb112560_P001, Zm00001eb409480_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-30114, nbis-gene-36829 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g25085, Zma_g25852 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.255, evm.TU.LG09.1494 |
| Posidoniaceae | Posidonia oceanica | 4 | gene.Posoc03g15840, gene.Posoc04g09240, gene.Posoc06g17050 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.635 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-7437 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7046 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000012l.423 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011461 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8374 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-787 |
| Salicaceae | Populus euphratica | 5 | populus_peu02363, populus_peu02408, populus_peu05909 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132612634 |
| Solanaceae | Solanum chilense | 1 | SOLCI000713400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018012 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G2086, TC04G0305 |
| Zosteraceae | Zostera marina | 2 | Zosma05g05160.v3.1, Zosma06g10400.v3.1 |