halophFGD

Basic Information

Locus ID: BniB02g017100.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B2	10652323	10655471	+	BniB02g017100.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.64	55,510.75 Da	33.29	92.67	-0.12

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	9	302	3.1656E-60	-
Pfam	PF00400	WD domain, G-beta repeat	121	158	3.1E-8	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	189	222	0.2	IPR001680
Pfam	PF04053	Coatomer WD associated region	334	490	2.8E-23	IPR006692
Pfam	PF00400	WD domain, G-beta repeat	231	267	0.0048	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	79	116	4.9E-9	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	4	319	1.5E-59	IPR036322
Gene3D	G3DSA:2.130.10.10	-	1	312	2.1E-101	IPR015943
SMART	SM00320	WD40_4	77	116	7.7E-11	IPR001680
SMART	SM00320	WD40_4	119	158	4.7E-11	IPR001680
SMART	SM00320	WD40_4	184	223	0.0054	IPR001680
SMART	SM00320	WD40_4	2	37	350.0	IPR001680
SMART	SM00320	WD40_4	271	310	41.0	IPR001680
SMART	SM00320	WD40_4	40	74	110.0	IPR001680
SMART	SM00320	WD40_4	228	267	1.7E-4	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	191	232	10.408196	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	235	276	12.246197	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	191	222	8.676514	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	235	270	9.572873	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	126	160	13.026491	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	84	125	14.451798	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	126	167	16.156128	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	84	116	11.444681	-
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	145	159	-	IPR019775
PRINTS	PR00320	G protein beta WD-40 repeat signature	145	159	2.4E-7	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	103	117	2.4E-7	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	210	224	2.4E-7	IPR020472

Gene Ontology

Biological Process:

GO:0006886 (intracellular protein transport) GO:0016192 (vesicle-mediated transport)

Molecular Function:

GO:0005198 (structural molecule activity) GO:0005515 (protein binding)

Cellular Component:

GO:0030117 (membrane coat)

KEGG Pathway

KO Term:

K05236 (coatomer subunit alpha)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G62020.1	Coatomer, alpha subunit.
RefSeq	XP_027093238.1	LOW QUALITY PROTEIN: coatomer subunit alpha-1-like [Coffea arabica]
Swiss-Prot	Q94A40	Coatomer subunit alpha-1 OS=Arabidopsis thaliana OX=3702 GN=At1g62020 PE=2 SV=2
TrEMBL	A0A816N9F5	Coatomer subunit alpha OS=Brassica napus OX=3708 GN=DARMORV10_C07P63070.1 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Suaeda glauca	4	Sgl43929, Sgl43938, Sgl48695, Sgl48702
Anacardiaceae	Pistacia vera	2	pistato.v30047220, pistato.v30159560
Arecaceae	Cocos nucifera	1	COCNU_16G004000
Brassicaceae	Schrenkiella parvula	1	Sp4g00570.v2.2
Brassicaceae	Brassica nigra	1	BniB02g017100.2N
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate02g36000
Posidoniaceae	Posidonia oceanica	1	gene.Posoc10g10250