Basic Information
Locus ID:
BniB02g015630.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
DNA repair protein recA homolog 3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 9649255 | 9651348 | + | BniB02g015630.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.64 | 46,119.25 Da | 37.34 | 93.69 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00154 | recA bacterial DNA recombination protein | 62 | 325 | 3.8E-119 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 61 | 325 | 2.37E-55 | IPR027417 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 327 | 381 | 1.31E-6 | IPR023400 |
| Gene3D | G3DSA:3.40.50.300 | - | 89 | 392 | 4.6E-110 | IPR027417 |
| SMART | SM00382 | AAA_5 | 112 | 286 | 5.3E-8 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 59 | 380 | 2.9E-136 | IPR013765 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 259 | 330 | 25.782604 | IPR020587 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 90 | 249 | 38.745289 | IPR020588 |
| ProSitePatterns | PS00321 | recA signature. | 271 | 279 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 354 | 371 | 5.7E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 268 | 296 | 5.7E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 220 | 249 | 5.7E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 182 | 211 | 5.7E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 301 | 330 | 5.7E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 148 | 177 | 5.7E-75 | IPR013765 |
| Hamap | MF_00268 | Protein RecA [recA]. | 59 | 386 | 43.116535 | IPR013765 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 388 | 413 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19490.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_013651930.2 | DNA repair protein recA homolog 3, mitochondrial isoform X2 [Brassica napus] | 0 |
| Q9ZUP2 | DNA repair protein recA homolog 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g19490 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7V005 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_034867 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology