Basic Information
Locus ID:
BniB02g015480.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ABC transporter E family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 9529112 | 9529811 | + | BniB02g015480.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.90 | 23,718.82 Da | 43.96 | 90.00 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 130 | 194 | 6.2E-9 | IPR006527 |
| Pfam | PF07734 | F-box associated | 55 | 117 | 6.3E-13 | IPR006527 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 21 | 136 | 6.8E-5 | IPR011043 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 2 | 117 | 1.0E-17 | IPR017451 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G49510.1 | F-box family protein. | 0 |
| RefSeq | XP_013751376.1 | F-box protein At3g49510 [Brassica napus] | 0 |
| Q9CA02 | F-box protein At3g49510 OS=Arabidopsis thaliana OX=3702 GN=At3g49510 PE=2 SV=1 | 0 | |
| TrEMBL | M4DPD5 | FBA_1 domain-containing protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 24 | AT1G24800.1, AT1G24881.1, AT1G25055.1, AT1G25150.1 ... |
| Brassicaceae | Eutrema salsugineum | 15 | Thhalv10000447m.g.v1.0, Thhalv10002786m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g11150.v2.2, Sp3g32750.v2.2 |
| Brassicaceae | Brassica nigra | 13 | BniB01g039260.2N, BniB02g015480.2N, BniB04g007550.2N ... |