Basic Information
Locus ID:
BniB02g015380.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
SNF2 domain-containing protein helicase domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 9458239 | 9459616 | - | BniB02g015380.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.41 | 52,278.70 Da | 56.51 | 87.28 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 80 | 319 | 3.16596E-96 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 97 | 397 | 3.1E-73 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 40 | 319 | 5.6E-51 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 327 | 458 | 2.31E-13 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 334 | 459 | 4.0E-16 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 48 | 333 | 2.9E-62 | IPR038718 |
| SMART | SM00487 | ultradead3 | 76 | 292 | 5.6E-34 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 95 | 281 | 18.783302 | IPR014001 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16600.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_018437807.1 | PREDICTED: helicase-like transcription factor CHR28 [Raphanus sativus] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7S2A9 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_034849 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology