Basic Information
Locus ID:
BniB02g014130.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
NEP1-interacting protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 8452628 | 8452921 | + | BniB02g014130.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.48 | 7,582.52 Da | 69.59 | 63.91 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 17 | 61 | 6.8E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 16 | 64 | 2.37E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 64 | 1.0E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 19 | 60 | 2.2E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 19 | 61 | 10.084539 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35840.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_009150763.1 | NEP1-interacting protein 2 isoform X2 [Brassica rapa] | 0 |
| Q8GT75 | NEP1-interacting protein 1 OS=Arabidopsis thaliana OX=3702 GN=NIP1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A078GX59 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=BnaA06g25590D PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Brassica nigra | 1 | BniB02g014130.2N |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG09.349 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-11222, nbisL1-mrna-11223, nbisL1-mrna-11227 ... |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-10588, nbisL1-mrna-6105 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000006l.50 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20387 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7095 |