Basic Information
Locus ID:
BniB02g013860.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
PPR repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 8325298 | 8325697 | + | BniB02g013860.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.39 | 12,546.41 Da | 59.40 | 75.57 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 2 | 86 | 7.08E-11 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 84 | 2.2E-19 | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G17530.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_048593247.1 | SRSF protein kinase 3-like [Brassica napus] | 0 |
| Q03656 | Serine/threonine-protein kinase SKY1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SKY1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3P6B334 | Protein kinase domain-containing protein OS=Brassica oleracea OX=3712 GN=BOLC3T18105H PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah030804 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005657 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006101, gene:ENSEOMG00000039927 ... |
| Arecaceae | Cocos nucifera | 3 | COCNU_03G000600, COCNU_09G005480, scaffold057081G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120106072 |
| Brassicaceae | Brassica nigra | 1 | BniB02g013860.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1007 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g15450 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6928 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6120 |
| Salicaceae | Populus euphratica | 1 | populus_peu23229 |