Basic Information
Locus ID:
BniB02g010910.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 6152963 | 6155973 | + | BniB02g010910.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.23 | 79,804.94 Da | 47.09 | 81.46 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 412 | 672 | 1.75462E-86 | - |
| CDD | cd01989 | STK_N | 10 | 141 | 2.34818E-49 | - |
| Pfam | PF00582 | Universal stress protein family | 10 | 131 | 6.4E-12 | IPR006016 |
| Pfam | PF00069 | Protein kinase domain | 407 | 641 | 1.8E-40 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 390 | 661 | 6.97E-67 | IPR011009 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 10 | 132 | 3.68E-13 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 479 | 698 | 6.9E-48 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 2 | 140 | 7.1E-14 | IPR014729 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 374 | 478 | 5.0E-28 | - |
| SMART | SM00220 | serkin_6 | 406 | 666 | 5.2E-28 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 406 | 669 | 34.944206 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 524 | 536 | - | IPR008271 |
| Coils | Coil | Coil | 307 | 349 | - | - |
| Coils | Coil | Coil | 359 | 379 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G07020.1 | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain. | 0 |
| RefSeq | XP_033143490.1 | U-box domain-containing protein 35 [Brassica rapa] | 0 |
| Q8S8S7 | U-box domain-containing protein 34 OS=Arabidopsis thaliana OX=3702 GN=PUB34 PE=3 SV=1 | 0 | |
| TrEMBL | A0A8X7S6Y7 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_037469 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology