Basic Information
Locus ID:
BniB02g007670.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
AFB3
Description:
auxin signaling f-box
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 4105407 | 4107542 | - | BniB02g007670.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 65,262.50 Da | 47.43 | 96.84 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 2 | 42 | 1.2E-17 | IPR041567 |
| Pfam | PF13516 | Leucine Rich repeat | 149 | 165 | 0.087 | IPR001611 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 61 | 107 | 9.3E-24 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 17 | 403 | 2.2E-29 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 369 | 550 | 2.17E-7 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 41 | 579 | 4.5E-173 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 40 | 4.7E-16 | - |
| SMART | SM00256 | fbox_2 | 4 | 45 | 0.0051 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12820.1 | auxin signaling F-box 3. Auxin receptor involved in primary and lateral root growth inhibition in response to nitrate. Target of miR393. Induced by nitrate in primary roots. | 0 |
| RefSeq | XP_018438508.1 | PREDICTED: protein AUXIN SIGNALING F-BOX 3 [Raphanus sativus] | 0 |
| Q9LPW7 | Protein AUXIN SIGNALING F-BOX 3 OS=Arabidopsis thaliana OX=3702 GN=AFB3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7S1I1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_034248 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology