Basic Information
Locus ID:
BniB02g007640.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 4090392 | 4092313 | + | BniB02g007640.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 42,758.12 Da | 64.78 | 86.29 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16474 | RING-H2_RNF111_like | 327 | 371 | 7.20146E-21 | - |
| Pfam | PF13639 | Ring finger domain | 327 | 369 | 9.4E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 318 | 375 | 3.03E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 314 | 381 | 4.3E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 328 | 368 | 9.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 328 | 369 | 12.563043 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 144 | 166 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 148 | 166 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
| Coils | Coil | Coil | 381 | 383 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12760.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_009118058.1 | E3 ubiquitin-protein ligase At1g12760 isoform X2 [Brassica rapa] | 0 |
| Q9LN71 | E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana OX=3702 GN=At1g12760 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7S0V8 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_034250 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology