Basic Information
Locus ID:
BniB02g007610.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
endonuclease activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 4051406 | 4053334 | - | BniB02g007610.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.62 | 26,740.88 Da | 55.99 | 85.17 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13041 | PPR repeat family | 25 | 71 | 2.1E-13 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1 | 173 | 1.1E-22 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 63 | 89 | 2.2E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 28 | 60 | 3.5E-8 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 60 | 94 | 8.95544 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 25 | 59 | 12.945353 | IPR002885 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12760.2 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_033138678.1 | pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like [Brassica rapa] | 0 |
| Q9LN71 | E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana OX=3702 GN=At1g12760 PE=1 SV=1 | 0 | |
| TrEMBL | A0A078HBM3 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=BnaA09g47950D PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology