Basic Information
Locus ID:
BniB02g006870.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
E3 ubiquitin-protein ligase RNF182-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 3658090 | 3658890 | + | BniB02g006870.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.95 | 29,908.81 Da | 46.90 | 96.99 | 0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 71 | 100 | 1.4E-7 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 61 | 129 | 2.69E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 58 | 155 | 3.2E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 71 | 125 | 0.0042 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 71 | 126 | 10.468117 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 90 | 99 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 62 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69330.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_013649359.2 | uncharacterized protein LOC106354060 [Brassica napus] | 0 |
| TrEMBL | A0A8X7UBS3 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_067437 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology