Basic Information
Locus ID:
BniB02g006570.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the glycosyl hydrolase 17 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 3473433 | 3475258 | - | BniB02g006570.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 48,285.19 Da | 30.97 | 86.08 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07983 | X8 domain | 311 | 382 | 8.8E-22 | IPR012946 |
| Pfam | PF00332 | Glycosyl hydrolases family 17 | 2 | 293 | 9.5E-69 | IPR000490 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 1 | 293 | 1.57E-71 | IPR017853 |
| Gene3D | G3DSA:1.20.58.1040 | - | 304 | 416 | 2.2E-11 | - |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 1 | 300 | 2.8E-99 | - |
| SMART | SM00768 | X8_cls | 310 | 395 | 1.2E-51 | IPR012946 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11820.2 | O-Glycosyl hydrolases family 17 protein. | 0 |
| RefSeq | XP_018458289.1 | PREDICTED: glucan endo-1,3-beta-glucosidase 1-like isoform X2 [Raphanus sativus] | 0 |
| O65399 | Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana OX=3702 GN=At1g11820 PE=2 SV=3 | 0 | |
| TrEMBL | A0A8X7S7C1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_037429 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology