Basic Information
Locus ID:
BniB02g006350.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
polyadenylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 3351965 | 3355435 | + | BniB02g006350.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.53 | 72,117.49 Da | 41.79 | 72.79 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12345 | RRM2_SECp43_like | 538 | 617 | 1.41601E-45 | - |
| CDD | cd12344 | RRM1_SECp43_like | 447 | 526 | 2.74329E-42 | - |
| Pfam | PF07734 | F-box associated | 204 | 359 | 3.5E-22 | IPR006527 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 541 | 603 | 1.8E-13 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 448 | 514 | 7.5E-12 | IPR000504 |
| Pfam | PF00646 | F-box domain | 4 | 44 | 8.5E-8 | IPR001810 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 413 | 525 | 2.55E-22 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 533 | 632 | 7.33E-22 | IPR035979 |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 51 | 4.19E-13 | IPR036047 |
| Gene3D | G3DSA:3.30.70.330 | - | 528 | 632 | 5.8E-20 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 445 | 526 | 4.0E-22 | IPR012677 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 55 | 1.4E-5 | - |
| SMART | SM00256 | fbox_2 | 5 | 45 | 4.1E-6 | IPR001810 |
| SMART | SM00360 | rrm1_1 | 447 | 520 | 2.0E-14 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 540 | 614 | 5.3E-19 | IPR000504 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 106 | 327 | 4.9E-42 | IPR017451 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 446 | 527 | 14.572872 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 539 | 618 | 16.056692 | IPR000504 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11650.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_013601845.1 | PREDICTED: putative F-box/LRR-repeat/kelch-repeat protein At1g11620 [Brassica oleracea var. oleracea] | 0 |
| Q9SAB3 | Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana OX=3702 GN=RBP45B PE=1 SV=1 | 0 | |
| TrEMBL | A0A0D3DXY2 | F-box domain-containing protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G31510.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10000539m.g.v1.0, Thhalv10011016m.g.v1.0 ... |
| Brassicaceae | Brassica nigra | 5 | BniB02g006350.2N, BniB08g012450.2N, BniB08g064620.2N ... |