Basic Information
Locus ID:
BniB02g006100.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
RNA splicing
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 3164704 | 3165882 | + | BniB02g006100.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.90 | 45,856.40 Da | 56.48 | 84.44 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 39 | 76 | 2.9E-11 | IPR001810 |
| Pfam | PF07734 | F-box associated | 242 | 351 | 1.8E-11 | IPR006527 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 207 | 384 | 9.15E-8 | IPR011043 |
| SUPERFAMILY | SSF81383 | F-box domain | 37 | 145 | 4.45E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 34 | 91 | 2.0E-7 | - |
| SMART | SM00256 | fbox_2 | 40 | 79 | 4.3E-10 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 131 | 325 | 2.3E-20 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 34 | 79 | 11.881966 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11270.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_033134684.1 | F-box protein At1g11270-like [Brassica rapa] | 0 |
| Q7X7A9 | F-box protein At1g11270 OS=Arabidopsis thaliana OX=3702 GN=At1g11270 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3P5Y959 | (field mustard) hypothetical protein OS=Brassica campestris OX=3711 GN=BRAA09T41803Z PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 15 | AT1G09650.1, AT1G11270.1, AT1G12490.1, AT1G12855.1 ... |
| Brassicaceae | Eutrema salsugineum | 30 | Thhalv10000283m.g.v1.0, Thhalv10002950m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp1g27610.v2.2, Sp2g14700.v2.2, Sp6g09040.v2.2 ... |
| Brassicaceae | Brassica nigra | 27 | BniB01g008490.2N, BniB02g006100.2N, BniB02g006160.2N ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00035511 |