Basic Information
Locus ID:
BniB02g006060.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 3109207 | 3112434 | - | BniB02g006060.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.81 | 90,613.65 Da | 41.28 | 93.67 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 628 | 754 | 2.69531E-56 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 310 | 530 | 1.93227E-84 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 323 | 607 | 6.5E-67 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 630 | 743 | 6.0E-17 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 538 | 784 | 8.33E-58 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 293 | 530 | 6.05E-50 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 277 | 541 | 8.6E-62 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 545 | 797 | 6.7E-71 | IPR027417 |
| SMART | SM00490 | helicmild6 | 660 | 743 | 1.6E-18 | IPR001650 |
| SMART | SM00487 | ultradead3 | 306 | 500 | 1.0E-25 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 322 | 492 | 14.727928 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 630 | 792 | 15.259277 | IPR001650 |
| Coils | Coil | Coil | 34 | 54 | - | - |
| Coils | Coil | Coil | 756 | 776 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11100.5 | - | 0 |
| RefSeq | XP_013716147.1 | helicase-like transcription factor CHR28 [Brassica napus] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8D9D336 | (field mustard) hypothetical protein OS=Brassica campestris OX=3711 GN=BRAPAZ1V2_A09P77250.2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology