Basic Information
Locus ID:
BniB02g006050.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 3095168 | 3108807 | + | BniB02g006050.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.79 | 247,835.45 Da | 51.58 | 80.42 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 777 | 1027 | 4.19161E-66 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 902 | 938 | 3.1E-9 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 819 | 854 | 0.0063 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 1563 | 1707 | 3.2E-41 | IPR028021 |
| Pfam | PF13925 | con80 domain of Katanin | 2125 | 2168 | 1.2E-8 | IPR028021 |
| Pfam | PF13855 | Leucine rich repeat | 141 | 199 | 3.0E-8 | IPR001611 |
| Pfam | PF00400 | WD domain, G-beta repeat | 860 | 896 | 9.1E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 942 | 980 | 2.4E-6 | IPR001680 |
| Pfam | PF00069 | Protein kinase domain | 511 | 773 | 6.0E-31 | IPR000719 |
| Pfam | PF00400 | WD domain, G-beta repeat | 775 | 812 | 0.032 | IPR001680 |
| SUPERFAMILY | SSF52058 | L domain-like | 53 | 233 | 1.31E-31 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 775 | 1029 | 6.51E-69 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 487 | 775 | 4.91E-58 | IPR011009 |
| Gene3D | G3DSA:2.130.10.10 | - | 901 | 1064 | 2.1E-37 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 775 | 900 | 9.7E-32 | IPR015943 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 29 | 244 | 2.2E-41 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 587 | 774 | 5.2E-42 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 2168 | 2247 | 1.4E-6 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 475 | 586 | 2.3E-22 | - |
| SMART | SM00320 | WD40_4 | 899 | 938 | 8.0E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 815 | 854 | 6.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 941 | 980 | 5.1E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 772 | 812 | 0.0064 | IPR001680 |
| SMART | SM00320 | WD40_4 | 983 | 1021 | 0.096 | IPR001680 |
| SMART | SM00320 | WD40_4 | 857 | 896 | 6.0E-8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 906 | 943 | 13.685579 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 948 | 989 | 15.086744 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 906 | 947 | 17.827036 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 864 | 905 | 15.287253 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 779 | 813 | 8.57106 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 864 | 898 | 11.998316 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 822 | 856 | 10.785595 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 779 | 821 | 11.009724 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 948 | 983 | 11.998316 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 509 | 780 | 32.44249 | IPR000719 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 822 | 863 | 13.85027 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 967 | 981 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 883 | 897 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 925 | 939 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 967 | 981 | 6.8E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 883 | 897 | 6.8E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 925 | 939 | 6.8E-7 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 768 | 1726 | 18.670355 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1149 | 1192 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1314 | 1340 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 245 | 293 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1248 | 1298 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1250 | 1298 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1838 | 1859 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1766 | 1859 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1206 | 1231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1159 | 1175 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1362 | 1388 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1779 | 1800 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1458 | 1497 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1217 | 1231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 293 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1322 | 1340 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1354 | 1391 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11130.1 | Leucine-rich repeat protein kinase family protein. Encodes a receptor-like kinase protein with a predicted extracellular domain of six leucine-rich repeats and an intracellular serine-threonine kinase domain expressed throughout the developing root. Regulates expression of GLABRA2, CAPRICE, WEREWOLF, and ENHANCER OF GLABRA3. Required for floral organ shape, the development of the outer integument of ovules, and stem development. Regulates cell shape and cell division planes in the L2 layer of floral meristems and the L1-derived outer integument of ovules. Controls specification of epidermal root hairs. Participates in the coordination of cell morphogenesis between cell layers during floral development. | 0 |
| RefSeq | XP_022563607.2 | protein STRUBBELIG isoform X1 [Brassica napus] | 0 |
| Q8RWZ1 | Protein STRUBBELIG OS=Arabidopsis thaliana OX=3702 GN=SUB PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7S4N4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_037380 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology