Basic Information
Locus ID:
BniB02g006010.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 3075962 | 3077432 | + | BniB02g006010.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.56 | 35,396.34 Da | 48.48 | 83.19 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 56 | 108 | 6.61087E-19 | - |
| Pfam | PF12906 | RING-variant domain | 56 | 107 | 2.5E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 51 | 112 | 3.88E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 41 | 119 | 7.3E-18 | IPR013083 |
| SMART | SM00744 | ringv_2 | 55 | 108 | 1.4E-15 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 48 | 114 | 22.189116 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 35 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11020.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_009118228.1 | E3 ubiquitin-protein ligase MARCH1 [Brassica rapa] | 0 |
| TrEMBL | A0A3P5YS35 | (field mustard) hypothetical protein OS=Brassica campestris OX=3711 GN=BRAA09T41814Z PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology