Basic Information
Locus ID:
BniB02g005920.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
DNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 3040118 | 3046680 | - | BniB02g005920.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.18 | 131,140.73 Da | 49.35 | 77.99 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 444 | 643 | 4.24248E-104 | - |
| CDD | cd18794 | SF2_C_RecQ | 644 | 776 | 6.53734E-75 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 660 | 766 | 4.2E-18 | IPR001650 |
| Pfam | PF00570 | HRDC domain | 1014 | 1079 | 3.5E-15 | IPR002121 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 455 | 623 | 1.5E-18 | IPR011545 |
| Pfam | PF09382 | RQC domain | 866 | 979 | 4.5E-20 | IPR018982 |
| Pfam | PF16124 | RecQ zinc-binding | 778 | 858 | 2.8E-15 | IPR032284 |
| SUPERFAMILY | SSF47819 | HRDC-like | 1013 | 1083 | 4.8E-13 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 428 | 785 | 6.63E-42 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 642 | 908 | 4.09E-57 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 1004 | 1089 | 2.3E-22 | IPR044876 |
| Gene3D | G3DSA:1.10.10.10 | - | 865 | 976 | 2.4E-19 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 644 | 860 | 4.9E-66 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 416 | 643 | 1.7E-91 | IPR027417 |
| SMART | SM00490 | helicmild6 | 686 | 767 | 1.2E-27 | IPR001650 |
| SMART | SM00487 | ultradead3 | 449 | 652 | 3.5E-30 | IPR014001 |
| SMART | SM00341 | hrdc7 | 1007 | 1089 | 1.1E-4 | IPR002121 |
| SMART | SM00956 | RQC_2 | 867 | 978 | 2.3E-27 | IPR018982 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 445 | 918 | 7.0E-164 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 661 | 806 | 19.347363 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 461 | 636 | 22.474005 | IPR014001 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 1007 | 1089 | 16.979818 | IPR002121 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 676 | 717 | 8.986092 | IPR001763 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 575 | 584 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1090 | 1118 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1097 | 1112 | - | - |
| Coils | Coil | Coil | 312 | 342 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_048597788.1 | ATP-dependent DNA helicase Q-like 4A [Brassica napus] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A6J0P3S2 | DNA helicase OS=Raphanus sativus OX=3726 GN=LOC108862164 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology