Basic Information
Locus ID:
BniB02g003750.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Cupin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 1831377 | 1833034 | + | BniB02g003750.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.13 | 38,563.59 Da | 34.85 | 86.74 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02243 | cupin_11S_legumin_C | 198 | 353 | 1.73538E-76 | - |
| CDD | cd02242 | cupin_11S_legumin_N | 3 | 173 | 3.88123E-68 | - |
| Pfam | PF00190 | Cupin | 9 | 157 | 2.5E-29 | IPR006045 |
| Pfam | PF00190 | Cupin | 196 | 338 | 4.1E-24 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 12 | 345 | 1.02E-47 | IPR011051 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 3 | 187 | 2.1E-33 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 195 | 356 | 2.1E-49 | IPR014710 |
| SMART | SM00835 | Cupin_1_3 | 195 | 339 | 7.3E-17 | IPR006045 |
| SMART | SM00835 | Cupin_1_3 | 3 | 157 | 2.1E-33 | IPR006045 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 276 | 291 | 5.9E-14 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 211 | 231 | 5.9E-14 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 258 | 274 | 5.9E-14 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 316 | 333 | 5.9E-14 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 294 | 312 | 5.9E-14 | IPR006044 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28680.1 | RmlC-like cupins superfamily protein. | 0 |
| RefSeq | XP_013716264.2 | glutelin type-D 1 [Brassica napus] | 0 |
| Q8GZP6 | 11S globulin seed storage protein Ana o 2.0101 (Fragment) OS=Anacardium occidentale OX=171929 PE=1 SV=1 | 0 | |
| TrEMBL | A0A397YG34 | 11S globulin OS=Brassica campestris OX=3711 GN=BRARA_I05340 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology