Basic Information
Locus ID:
BniB02g001990.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 1089747 | 1092219 | - | BniB02g001990.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 50,132.88 Da | 59.34 | 72.53 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 270 | 334 | 7.23532E-23 | - |
| CDD | cd16872 | ARID_HMGB9-like | 37 | 122 | 2.46005E-47 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 39 | 122 | 7.5E-17 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 270 | 337 | 1.7E-14 | IPR009071 |
| SUPERFAMILY | SSF47095 | HMG-box | 267 | 339 | 3.53E-21 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 33 | 134 | 5.49E-28 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 252 | 347 | 1.2E-20 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 24 | 133 | 1.7E-24 | IPR036431 |
| SMART | SM00501 | bright_3 | 36 | 127 | 6.8E-26 | IPR001606 |
| SMART | SM00398 | hmgende2 | 269 | 338 | 6.5E-20 | IPR009071 |
| SMART | SM01014 | ARID_2 | 32 | 122 | 8.2E-29 | - |
| ProSiteProfiles | PS51011 | ARID domain profile. | 35 | 126 | 25.495802 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 270 | 337 | 15.387293 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 244 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 368 | 440 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 278 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 264 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 368 | 384 | - | - |
| Coils | Coil | Coil | 319 | 339 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_013716355.2 | high mobility group B protein 15 [Brassica napus] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3P6GIA3 | High mobility group B protein 15-like OS=Brassica oleracea OX=3712 GN=BOLC8T52735H PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology