Basic Information
Locus ID:
BniB02g000490.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 291688 | 297352 | - | BniB02g000490.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.64 | 48,325.54 Da | 67.81 | 72.01 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16539 | RING-HC_RNF113A_B | 315 | 343 | 5.64434E-17 | - |
| Pfam | PF00125 | Core histone H2A/H2B/H3/H4 | 357 | 395 | 1.4E-12 | IPR007125 |
| SUPERFAMILY | SSF47113 | Histone-fold | 348 | 395 | 4.85E-12 | IPR009072 |
| SUPERFAMILY | SSF57850 | RING/U-box | 315 | 349 | 2.02E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 308 | 345 | 6.5E-6 | IPR013083 |
| Gene3D | G3DSA:1.10.20.10 | Histone, subunit A | 346 | 397 | 3.1E-10 | IPR009072 |
| SMART | SM00428 | h35 | 327 | 412 | 5.6E-8 | IPR000164 |
| PRINTS | PR00622 | Histone H3 signature | 354 | 372 | 1.1E-5 | IPR000164 |
| PRINTS | PR00622 | Histone H3 signature | 372 | 388 | 1.1E-5 | IPR000164 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 286 | 305 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 242 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G01370.1 | Histone superfamily protein. Encodes a centromere-identifying protein histone H3 variant. Localized at centromeres in both mitotic and meiotic cells. | 0 |
| RefSeq | XP_024008207.1 | histone H3-like centromeric protein HTR12 isoform X2 [Eutrema salsugineum] | 0 |
| Q8RVQ9 | Histone H3-like centromeric protein CENH3 OS=Arabidopsis thaliana OX=3702 GN=CENH3 PE=1 SV=3 | 0 | |
| TrEMBL | A0A1B1TJM7 | Centromere-specific histone H3 OS=Brassica nigra OX=3710 GN=CENH3 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg29439 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23556 |
| Amaranthaceae | Atriplex hortensis | 4 | Ah010097, Ah029096, Ah029526, Ah036934 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g103040 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg11981, Sbi_jg39543, Sbi_jg46911, Sbi_jg54768 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg14791, Seu_jg21200 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005602 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl55659, Sgl60866, Sgl71266, Sgl74838 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000019996, gene:ENSEOMG00000038132 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0006640, CQ.Regalona.r1.9AG0018060 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30005660 |
| Apiaceae | Apium graveolens | 2 | Ag7G00124, Ag7G02470 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G003020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103707227 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.365.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G05286 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G01350.1, AT4G01023.1, AT5G06420.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10009432m.g.v1.0, Thhalv10029283m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g00940.v2.2, Sp6g01130.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g000490.2N, BniB02g022740.2N, BniB03g037150.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1248 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1289 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g02890 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0341s00001.v1.0, Dusal.0341s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g21710 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.720 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00011633, Pov_00022441, Pov_00025824 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G31400 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.2109, BH02.2176, CH02.2334 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0108130, gene-QOZ80_2BG0161770 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0391280.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_022336, gene-QYE76_052300, gene-QYE76_065406 |
| Poaceae | Oryza coarctata | 2 | Oco03G008370, Oco04G008710 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g19804.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G108800 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr0G013750, Chr0G033170 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G686600, Tel4E01G385800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG011310, gene_TRIDC6BG048250 |
| Poaceae | Triticum aestivum | 4 | TraesCS4A02G082400.1, TraesCS4B02G221600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb204190_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-34184, nbis-gene-50910 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12533 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.1270, evm.TU.LG24.1270 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g23210 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.1173 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6810 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2667 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22054 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.211 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015850 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16327 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21392 |
| Salicaceae | Populus euphratica | 1 | populus_peu27573 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621144 |
| Solanaceae | Solanum chilense | 1 | SOLCI003805700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011147 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_15843 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2260 |
| Zosteraceae | Zostera marina | 1 | Zosma04g04560.v3.1 |