Basic Information
Locus ID:
BniB01g059530.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Contains the following InterPro domains F-box domain, cyclin-like (InterPro IPR001810), F-box domain, Skp2-like (InterPro IPR022364), F-box associated domain, type 3 (InterPro IPR013187), F-box associated interaction domain (InterPro IPR017451)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 56397022 | 56398125 | + | BniB01g059530.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 42,164.97 Da | 42.01 | 90.46 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08268 | F-box associated domain | 200 | 322 | 2.2E-16 | IPR013187 |
| Pfam | PF00646 | F-box domain | 3 | 45 | 2.0E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 3 | 73 | 3.14E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 55 | 9.5E-8 | - |
| SMART | SM00256 | fbox_2 | 6 | 46 | 1.2E-6 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 100 | 337 | 4.8E-28 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 49 | 11.590527 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G70970.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | NP_177253.1 | F-box and associated interaction domains-containing protein [Arabidopsis thaliana] | 0 |
| Q9SSK2 | Putative F-box protein At1g70970 OS=Arabidopsis thaliana OX=3702 GN=At1g70970 PE=4 SV=1 | 0 | |
| TrEMBL | A0A8X7QMG4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_067710 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 6 | AT1G70380.1, AT1G70390.1, AT1G70960.1, AT1G70970.1 ... |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10019476m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g03160.v2.2, Sp6g11610.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g059530.2N |