Basic Information
Locus ID:
BniB01g058840.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
IAA16
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 55995786 | 55997252 | + | BniB01g058840.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.90 | 25,488.83 Da | 27.84 | 67.37 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 26 | 227 | 1.8E-80 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 113 | 217 | 9.22E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 114 | 229 | 4.0E-42 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 118 | 218 | 23.927704 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 108 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04730.1 | indoleacetic acid-induced protein 16. early auxin-induced (IAA16) | 0 |
| RefSeq | XP_018467588.1 | PREDICTED: auxin-responsive protein IAA16-like [Raphanus sativus] | 0 |
| O24407 | Auxin-responsive protein IAA16 OS=Arabidopsis thaliana OX=3702 GN=IAA16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7UD23 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_067646 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology