Basic Information
Locus ID:
BniB01g057930.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ATP-dependent DNA helicase
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 55566778 | 55570399 | - | BniB01g057930.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 66,697.49 Da | 38.01 | 83.52 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 229 | 423 | 3.05497E-95 | - |
| CDD | cd18794 | SF2_C_RecQ | 424 | 557 | 2.95628E-70 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 237 | 402 | 3.3E-17 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 439 | 547 | 9.7E-17 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 275 | 568 | 6.14E-53 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 424 | 592 | 4.1E-50 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 196 | 423 | 2.9E-80 | IPR027417 |
| SMART | SM00490 | helicmild6 | 466 | 548 | 2.4E-23 | IPR001650 |
| SMART | SM00487 | ultradead3 | 231 | 432 | 2.2E-26 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 229 | 585 | 5.1E-144 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 243 | 416 | 20.430601 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 438 | 588 | 19.168106 | IPR001650 |
| ProSiteProfiles | PS51193 | Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. | 213 | 592 | 8.610676 | IPR014013 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 355 | 364 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 139 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 129 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_009147215.1 | ATP-dependent DNA helicase Q-like 1 [Brassica rapa] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7QNF2 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_067252 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology