Basic Information
Locus ID:
BniB01g057500.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 55379357 | 55383005 | + | BniB01g057500.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.21 | 66,860.50 Da | 57.73 | 73.13 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 522 | 562 | 2.3426E-25 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 521 | 567 | 2.0E-15 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 522 | 568 | 2.0E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 504 | 573 | 1.9E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 523 | 561 | 1.3E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 523 | 562 | 11.604098 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006407977.2 | LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase LUL4 [Eutrema salsugineum] | 0 |
| Q8LA32 | Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL4 PE=2 SV=1 | 0 | |
| TrEMBL | D7L4S6 | E3 ubiquitin-protein ligase OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_317476 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology