Basic Information
Locus ID:
BniB01g057340.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Zinc finger (C3HC4-type RING finger) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 55308797 | 55311275 | - | BniB01g057340.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.23 | 48,587.13 Da | 64.25 | 91.55 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 235 | 282 | 5.4017E-14 | - |
| Pfam | PF12906 | RING-variant domain | 235 | 281 | 2.1E-12 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 231 | 285 | 1.46E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 220 | 289 | 4.8E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 234 | 282 | 8.6E-20 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 235 | 282 | 8.535474 | IPR001841 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 227 | 288 | 20.734076 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 99 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 99 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 61 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06330.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_009129658.1 | uncharacterized protein LOC103854472 isoform X1 [Brassica rapa] | 0 |
| TrEMBL | A0A8X7QNT4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_067507 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology