Basic Information
Locus ID:
BniB01g056320.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
A domain family that is part of the cupin metalloenzyme superfamily.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 54759812 | 54766755 | - | BniB01g056320.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.81 | 113,818.68 Da | 48.76 | 67.30 | -0.88 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02373 | JmjC domain, hydroxylase | 818 | 914 | 4.9E-13 | IPR003347 |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 578 | 951 | 4.81E-39 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 570 | 940 | 3.7E-157 | - |
| SMART | SM00384 | AT_hook_2 | 71 | 82 | 310.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 54 | 66 | 3.8 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 130 | 142 | 310.0 | IPR017956 |
| SMART | SM00558 | cupin_9 | 682 | 931 | 1.1E-73 | IPR003347 |
| SMART | SM00384 | AT_hook_2 | 91 | 103 | 3.8 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 164 | 176 | 30.0 | IPR017956 |
| ProSiteProfiles | PS51184 | JmjC domain profile. | 701 | 931 | 27.297819 | IPR003347 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 270 | 317 | 8.520721 | IPR001841 |
| PRINTS | PR00929 | AT-hook-like domain signature | 54 | 64 | 3.2E-5 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 128 | 138 | 3.2E-5 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 89 | 100 | 3.2E-5 | IPR017956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 143 | 182 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 965 | 995 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 202 | - | - |
| Coils | Coil | Coil | 763 | 783 | - | - |
| Coils | Coil | Coil | 795 | 815 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07610.1 | Transcription factor jumonji (jmjC) domain-containing protein. IBM1 likely encodes a protein with histone H3mK9 demethylation activity. It may preferentially demethylate H3mK9 at low-copy loci to protect them from silencing by nearby heterochromatin by preventing the spread of cytosine methylation. BONSAI (At1g73177) is hypermethylated in ibm1 mutants. ibm1 mutants have morphological defects that become apparent at the F3 generation, including small narrow leaves, arrested flower development, and faulty pollen development. These phenotypes cannot result solely from the BONSAI hypermethylation. Aberrant phenotypes in ibm1 mutants in both DNA methylation and plant development can be suppressed by mutations in the KYP H3K9 methyltransferase or he CMT3 non CG-cytosine methylase. | 0 |
| RefSeq | XP_013587301.1 | PREDICTED: lysine-specific demethylase JMJ25 [Brassica oleracea var. oleracea] | 0 |
| Q9SSE9 | Lysine-specific demethylase JMJ25 OS=Arabidopsis thaliana OX=3702 GN=JMJ25 PE=1 SV=1 | 0 | |
| TrEMBL | A0A816LKS6 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=DARMORV10_C05P59690.1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology