Basic Information
Locus ID:
BniB01g055450.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
serine threonine-protein kinase At5g41260
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 54396719 | 54399152 | + | BniB01g055450.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 55,701.82 Da | 52.19 | 74.19 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 73 | 309 | 8.7E-24 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 34 | 319 | 1.18E-41 | IPR011009 |
| SUPERFAMILY | SSF48452 | TPR-like | 392 | 488 | 1.36E-15 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 386 | 491 | 6.0E-16 | IPR011990 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 136 | 322 | 4.3E-39 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 29 | 134 | 1.3E-27 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 46 | 313 | 20.258982 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 325 | 344 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 345 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 36 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09240.3 | - | 0 |
| RefSeq | XP_013584796.1 | PREDICTED: probable serine/threonine-protein kinase At5g41260 [Brassica oleracea var. oleracea] | 0 |
| Q9M324 | Serine/threonine-protein kinase BSK6 OS=Arabidopsis thaliana OX=3702 GN=BSK6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7UBF4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_066999 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G09240.1, AT5G01060.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10013351m.g.v1.0, Thhalv10020637m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g07620.v2.2, Sp6g40450.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g055450.2N, BniB02g058000.2N, BniB05g031390.2N ... |