Basic Information
Locus ID:
BniB01g055170.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 54289306 | 54292847 | + | BniB01g055170.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.90 | 43,565.93 Da | 37.61 | 103.44 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 238 | 360 | 1.36275E-54 | - |
| Pfam | PF04689 | DNA binding protein S1FA | 3 | 67 | 8.2E-38 | IPR006779 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 257 | 351 | 2.6E-30 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 168 | 385 | 6.68E-48 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 198 | 388 | 9.6E-51 | IPR027417 |
| SMART | SM00487 | ultradead3 | 150 | 344 | 9.4E-11 | IPR014001 |
| SMART | SM00490 | helicmild6 | 270 | 351 | 1.4E-34 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 246 | 390 | 25.257912 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 162 | 334 | 10.836027 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 131 | 159 | 10.28114 | IPR014014 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19760.1 | eukaryotic initiation factor 4A-III. Encodes an RNA helicase that may be a component of the Exon Junction Complex. Subcellular localization is modulated by stress. Under normal conditions it is localized to the nuceloplasm but under hyopoxic conditions it localizes to the nucleolus and splicing speckles. | 0 |
| RefSeq | XP_018489523.1 | PREDICTED: DEAD-box ATP-dependent RNA helicase 2-like [Raphanus sativus] | 0 |
| Q94A52 | Eukaryotic initiation factor 4A-III homolog OS=Arabidopsis thaliana OX=3702 GN=EIF4A3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6J0P0R1 | DEAD-box ATP-dependent RNA helicase 2-like OS=Raphanus sativus OX=3726 GN=LOC108860110 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology