Basic Information
Locus ID:
BniB01g055150.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 54283762 | 54285893 | + | BniB01g055150.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 51,858.45 Da | 60.86 | 78.95 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 251 | 299 | 1.40235E-16 | - |
| Pfam | PF12906 | RING-variant domain | 251 | 298 | 1.6E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 247 | 302 | 2.24E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 237 | 306 | 6.2E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 250 | 299 | 4.7E-18 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 243 | 305 | 18.407383 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 445 | 469 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 64 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 450 | 469 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09760.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_009146905.1 | uncharacterized protein LOC103870523 [Brassica rapa] | 0 |
| TrEMBL | A0A8X7UBH6 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_067167 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology