Basic Information
Locus ID:
BniB01g054610.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
F-box only protein 15
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 54022083 | 54023252 | + | BniB01g054610.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.98 | 43,838.50 Da | 50.73 | 80.64 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 10 | 45 | 9.1E-4 | IPR001810 |
| Pfam | PF07734 | F-box associated | 217 | 384 | 1.0E-23 | IPR006527 |
| SUPERFAMILY | SSF81383 | F-box domain | 9 | 48 | 2.75E-7 | IPR036047 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 109 | 333 | 2.6E-32 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 7 | 60 | 8.543671 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04690.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_013583422.1 | PREDICTED: putative F-box only protein 15 [Brassica oleracea var. oleracea] | 0 |
| Q9S9V1 | Putative F-box only protein 15 OS=Arabidopsis thaliana OX=3702 GN=FBX15 PE=4 SV=1 | 0 | |
| TrEMBL | A0A8X7QLS9 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_066936 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 7 | AT1G77650.1, AT1G77655.1, AT3G08750.1, AT3G10430.1 ... |
| Brassicaceae | Eutrema salsugineum | 9 | Thhalv10000601m.g.v1.0, Thhalv10015788m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g20410.v2.2, Sp6g23470.v2.2 |
| Brassicaceae | Brassica nigra | 17 | BniB01g054610.2N, BniB03g013050.2N, BniB03g013060.2N ... |