Basic Information
Locus ID:
BniB01g054510.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
protein binding, zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 53963229 | 53966663 | - | BniB01g054510.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.40 | 93,106.98 Da | 73.25 | 64.89 | -1.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 757 | 797 | 4.01634E-20 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 755 | 802 | 2.5E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 757 | 803 | 1.31E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 745 | 808 | 6.2E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 758 | 797 | 10.305834 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 124 | 151 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 277 | 300 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 78 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 238 | 266 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 404 | 480 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 171 | 300 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 414 | 470 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 625 | 647 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 84 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 197 | 218 | - | - |
| Coils | Coil | Coil | 687 | 707 | - | - |
| Coils | Coil | Coil | 309 | 329 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_013586553.1 | PREDICTED: uncharacterized protein LOC106295247 [Brassica oleracea var. oleracea] | 0 |
| Q0MW30 | E3 ubiquitin-protein ligase NEURL1B OS=Mus musculus OX=10090 GN=Neurl1b PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7TIW3 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_094677 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology