Basic Information
Locus ID:
BniB01g054190.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 53869431 | 53870027 | + | BniB01g054190.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.42 | 22,696.80 Da | 70.94 | 70.40 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 121 | 162 | 6.0E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 101 | 168 | 9.06E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 83 | 168 | 5.0E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 121 | 161 | 2.0E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 121 | 162 | 12.135206 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G10815.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_018489213.1 | PREDICTED: probable E3 ubiquitin-protein ligase RHC1A [Raphanus sativus] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A6J0NZU7 | probable E3 ubiquitin-protein ligase RHC1A OS=Raphanus sativus OX=3726 GN=LOC108859799 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology