Basic Information
Locus ID:
BniB01g053150.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 53429806 | 53431521 | + | BniB01g053150.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.27 | 55,314.50 Da | 52.36 | 105.17 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 30 | 100 | 4.8E-21 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 19 | 101 | 9.71E-29 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 133 | 447 | 3.25E-11 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 17 | 106 | 7.0E-30 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 121 | 479 | 8.6E-13 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 33 | 96 | 9.1E-35 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 29 | 103 | 34.721138 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11840.1 | plant U-box 24. Encodes a U-box-domain-containing E3 ubiquitin ligase that acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_013587093.1 | PREDICTED: E3 ubiquitin-protein ligase PUB24-like [Brassica oleracea var. oleracea] | 0 |
| Q9SF15 | E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana OX=3702 GN=PUB24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7V8B7 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_025570 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology