Basic Information
Locus ID:
BniB01g053070.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 53390491 | 53399253 | + | BniB01g053070.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.49 | 130,798.45 Da | 42.45 | 77.95 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 58 | 182 | 5.49022E-37 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 200 | 528 | 1.71115E-170 | - |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 888 | 1098 | 3.9E-56 | IPR029346 |
| Pfam | PF00917 | MATH domain | 66 | 184 | 4.3E-17 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 202 | 523 | 2.7E-47 | IPR001394 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 627 | 878 | 4.2E-77 | IPR024729 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 55 | 191 | 3.76E-39 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 197 | 554 | 1.04E-97 | IPR038765 |
| Gene3D | G3DSA:3.10.20.90 | - | 804 | 901 | 7.1E-28 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 687 | 803 | 8.9E-43 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 56 | 198 | 7.9E-49 | IPR008974 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 199 | 527 | 9.2E-90 | - |
| SMART | SM00061 | math_3 | 59 | 163 | 2.3E-16 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 202 | 526 | 40.217712 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 57 | 182 | 37.496941 | IPR002083 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 203 | 218 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 442 | 459 | - | IPR018200 |
| Coils | Coil | Coil | 539 | 562 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11910.1 | ubiquitin-specific protease 13. | 0 |
| RefSeq | XP_013586795.1 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 13 isoform X1 [Brassica oleracea var. oleracea] | 0 |
| Q84WU2 | Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7SK96 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_025562 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology