Basic Information
Locus ID:
BniB01g052550.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Chitin binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 53193442 | 53194752 | + | BniB01g052550.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.77 | 34,773.58 Da | 38.90 | 59.81 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06921 | ChtBD1_GH19_hevein | 21 | 61 | 2.18605E-16 | - |
| CDD | cd00325 | chitinase_GH19 | 75 | 305 | 1.67092E-113 | - |
| Pfam | PF00182 | Chitinase class I | 74 | 305 | 5.8E-140 | IPR000726 |
| Pfam | PF00187 | Chitin recognition protein | 22 | 60 | 2.5E-13 | IPR001002 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 22 | 64 | 1.31E-11 | IPR036861 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 71 | 311 | 3.09E-110 | IPR023346 |
| Gene3D | G3DSA:1.10.530.10 | - | 79 | 311 | 1.9E-122 | - |
| Gene3D | G3DSA:3.30.60.10 | - | 20 | 63 | 8.0E-17 | IPR036861 |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 157 | 214 | 1.9E-122 | - |
| SMART | SM00270 | ChitinBD_3 | 22 | 60 | 7.4E-15 | IPR001002 |
| PIRSF | PIRSF001060 | Endochitinase | 1 | 312 | 4.2E-126 | IPR016283 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 20 | 62 | 10.841081 | IPR001002 |
| ProSitePatterns | PS00773 | Chitinases family 19 signature 1. | 92 | 114 | - | IPR000726 |
| ProSitePatterns | PS00026 | Chitin recognition or binding domain signature. | 32 | 51 | - | IPR018371 |
| PRINTS | PR00451 | Chitin-binding domain signature | 45 | 52 | 1.8E-5 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 38 | 45 | 1.8E-5 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 30 | 38 | 1.8E-5 | IPR001002 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | XP_018490597.1 | PREDICTED: endochitinase CH25 [Raphanus sativus] | 0 |
| Q09023 | Endochitinase CH25 OS=Brassica napus OX=3708 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7SI31 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_025533 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology