Basic Information
Locus ID:
BniB01g052510.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Chitin binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 53183858 | 53185555 | + | BniB01g052510.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.48 | 34,765.78 Da | 32.27 | 56.46 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06921 | ChtBD1_GH19_hevein | 21 | 61 | 1.37179E-16 | - |
| CDD | cd00325 | chitinase_GH19 | 75 | 305 | 2.12197E-110 | - |
| Pfam | PF00182 | Chitinase class I | 74 | 305 | 2.6E-135 | IPR000726 |
| Pfam | PF00187 | Chitin recognition protein | 22 | 60 | 1.5E-13 | IPR001002 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 22 | 64 | 1.57E-11 | IPR036861 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 71 | 311 | 2.81E-109 | IPR023346 |
| Gene3D | G3DSA:1.10.530.10 | - | 79 | 311 | 4.3E-120 | - |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 157 | 214 | 4.3E-120 | - |
| Gene3D | G3DSA:3.30.60.10 | - | 20 | 63 | 3.1E-17 | IPR036861 |
| SMART | SM00270 | ChitinBD_3 | 22 | 60 | 2.2E-14 | IPR001002 |
| PIRSF | PIRSF001060 | Endochitinase | 1 | 312 | 1.1E-123 | IPR016283 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 20 | 62 | 10.667047 | IPR001002 |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 218 | 228 | - | IPR000726 |
| ProSitePatterns | PS00026 | Chitin recognition or binding domain signature. | 32 | 51 | - | IPR018371 |
| ProSitePatterns | PS00773 | Chitinases family 19 signature 1. | 92 | 114 | - | IPR000726 |
| PRINTS | PR00451 | Chitin-binding domain signature | 45 | 52 | 8.9E-6 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 38 | 45 | 8.9E-6 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 30 | 38 | 8.9E-6 | IPR001002 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | XP_018490597.1 | PREDICTED: endochitinase CH25 [Raphanus sativus] | 0 |
| Q09023 | Endochitinase CH25 OS=Brassica napus OX=3708 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6J0P0P3 | endochitinase CH25 OS=Raphanus sativus OX=3726 GN=LOC108861262 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology