Basic Information
Locus ID:
BniB01g052050.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 52956004 | 52961204 | + | BniB01g052050.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 165,717.97 Da | 38.66 | 104.77 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 306 | 593 | 1.17399E-89 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1235 | 1455 | 1.87791E-120 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 619 | 818 | 6.16619E-92 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 918 | 1212 | 1.79768E-90 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 305 | 572 | 4.8E-20 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 922 | 1161 | 1.4E-27 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1255 | 1402 | 2.4E-30 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 637 | 771 | 2.8E-20 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 920 | 1218 | 1.7E-53 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 293 | 597 | 3.4E-27 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 616 | 841 | 6.3E-57 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1230 | 1463 | 1.9E-65 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1220 | 1473 | 2.7E-80 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 882 | 1218 | 2.9E-60 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 600 | 863 | 9.3E-76 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 281 | 599 | 4.2E-42 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1263 | 1448 | 3.7E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 646 | 819 | 1.1E-11 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 305 | 585 | 24.05081 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 619 | 842 | 22.375727 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 920 | 1200 | 38.372154 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1237 | 1471 | 17.120317 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 744 | 758 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 859 | 886 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 869 | 886 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13100.1 | multidrug resistance-associated protein 7. member of MRP subfamily | 0 |
| RefSeq | XP_013586310.1 | PREDICTED: ABC transporter C family member 7 [Brassica oleracea var. oleracea] | 0 |
| Q9LK62 | ABC transporter C family member 7 OS=Arabidopsis thaliana OX=3702 GN=ABCC7 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7SK61 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_025487 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology