Basic Information
Locus ID:
BniB01g051880.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B1 | 52902314 | 52903271 | + | BniB01g051880.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.30 | 22,296.25 Da | 38.77 | 70.40 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 117 | 180 | 1.33114E-13 | - |
| Pfam | PF09011 | HMG-box domain | 114 | 183 | 2.6E-7 | IPR009071 |
| SUPERFAMILY | SSF47095 | HMG-box | 114 | 187 | 1.7E-16 | IPR036910 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 98 | 195 | 1.4E-13 | IPR036910 |
| SMART | SM00398 | hmgende2 | 116 | 185 | 9.5E-5 | IPR009071 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 117 | 184 | 10.293699 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 108 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13350.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_009146528.1 | high mobility group B protein 10 [Brassica rapa] | 0 |
| Q9LTT3 | High mobility group B protein 10 OS=Arabidopsis thaliana OX=3702 GN=HMGB10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7SEL1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_025467 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology